PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00101.1_g00039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 214aa    MW: 23785.9 Da    PI: 4.7637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00101.1_g00039.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-165099255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr +  +g+Wv+e+r+p   +k+ r++lg+f tae Aa+a++ a+ +l+g
  Rsa1.0_00101.1_g00039.1 50 IYRGVRLRN-SGKWVCEVREP---NKKSRIWLGTFLTAEIAARAHDVAAIALRG 99
                             69****999.7******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-3049109No hitNo description
PfamPF008471.1E-104999IPR001471AP2/ERF domain
SMARTSM003808.9E-2950113IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2050109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3050109IPR001471AP2/ERF domain
PROSITE profilePS5103220.95650107IPR001471AP2/ERF domain
PRINTSPR003674.5E-85162IPR001471AP2/ERF domain
PRINTSPR003674.5E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTFSTFSEM LGSEYESPVT LGGEYCPKLA ASCPKKPAGR KKFRETRHPI YRGVRLRNSG  60
KWVCEVREPN KKSRIWLGTF LTAEIAARAH DVAAIALRGK SACLNFADSA WRLRIPETTC  120
PKDIQKAAAE AAVAFQAEMN DTTTDHGLDL EETIVEAIFT EVNNDEFYMD EESMFGMPSL  180
LASMAEGMLL PLPSVQSEHN CDFDGDADVS LWSY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4378780.0AY437878.1 Brassica napus DREB2-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137527.11e-138PREDICTED: dehydration-responsive element-binding protein 1C-like
SwissprotQ9SYS61e-124DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLM4DRL91e-138M4DRL9_BRARP; Uncharacterized protein
TrEMBLQ9SWY21e-138Q9SWY2_BRANA; BnaAnng34260D protein
STRINGBra019162.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-107dehydration response element B1A